- feat: Enhance README with setup instructions, usage, and command documentation

- fix: Update API routes to include DOI URL handling and improve route organization

- chore: Add ORCID preload rule file and ensure proper registration

- docs: Add MIT License to the project for open-source compliance

- feat: Implement command to detect and fix missing dataset cross-references

- feat: Create command for updating DataCite DOI records with detailed logging and error handling

- docs: Add comprehensive documentation for dataset indexing command

- docs: Create detailed documentation for DataCite update command with usage examples and error handling

start/routes/api.ts

@@ -8,14 +8,24 @@ import AvatarController from '#controllers/Http/Api/AvatarController';
 import UserController from '#controllers/Http/Api/UserController';
 import CollectionsController from '#controllers/Http/Api/collections_controller';
 import { middleware } from '../kernel.js';
-// API
+
+// Clean DOI URL routes (no /api prefix)
+
+// API routes with /api prefix
 router
     .group(() => {
-        router.get('clients', [UserController, 'getSubmitters']).as('client.index').use(middleware.auth());;
-        router.get('authors', [AuthorsController, 'index']).as('author.index').use(middleware.auth());;
+        router.get('clients', [UserController, 'getSubmitters']).as('client.index').use(middleware.auth());
+        router.get('authors', [AuthorsController, 'index']).as('author.index').use(middleware.auth());
         router.get('datasets', [DatasetController, 'index']).as('dataset.index');
         router.get('persons', [AuthorsController, 'persons']).as('author.persons');
 
+        // This should come BEFORE any other routes that might conflict
+        router
+            .get('/dataset/:prefix/:value', [DatasetController, 'findByIdentifier'])
+            .where('prefix', /^10\.\d+$/) // Match DOI prefix pattern (10.xxxx)
+            .where('value', /^[a-zA-Z0-9._-]+\.[0-9]+(?:\.[0-9]+)*$/) // Match DOI suffix pattern
+            .as('dataset.findByIdentifier');
+
         router.get('/dataset', [DatasetController, 'findAll']).as('dataset.findAll');
         router.get('/dataset/:publish_id', [DatasetController, 'findOne']).as('dataset.findOne');
         router.get('/sitelinks/:year', [HomeController, 'findDocumentsPerYear']);
@@ -35,7 +45,7 @@ router
             .as('apps.twofactor_backupcodes.create')
             .use(middleware.auth());
 
-        router.get('collections/:id', [CollectionsController, 'show']).as('collection.show')
+        router.get('collections/:id', [CollectionsController, 'show']).as('collection.show');
     })
     // .namespace('App/Controllers/Http/Api')
     .prefix('api');

start/rules/orcid.ts

@@ -1,7 +1,7 @@
 /*
 |--------------------------------------------------------------------------
 | Preloaded File - node ace make:preload rules/orcid
-| ❯ Do you want to register the preload file in .adonisrc.ts file? (y/N) · true
+| Do you want to register the preload file in .adonisrc.ts file? (y/N) · true
 | DONE:    create start/rules/orcid.ts
 | DONE:    update adonisrc.ts file
 |--------------------------------------------------------------------------