- added doi registration
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- npm updates for webpack-encore and postcss-loader
- DatasetExtension.ts: use relation contributors for PersonContributor
- added DoiClient.ts and DoiClientContract.ts
- rozes.ts: addes routes for creating and storing doi identifier
- addes xslt doi_datacite.xslt needed for registering DOI identifier
This commit is contained in:
Kaimbacher 2024-01-26 09:39:03 +01:00
parent ebc62d9117
commit c9ba7d6adc
22 changed files with 1836 additions and 677 deletions

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@ -0,0 +1,443 @@
<?xml version="1.0" encoding="utf-8"?>
<!--
/**
* This file is part of TETHYS.
*
* LICENCE
* TETHYS is free software; you can redistribute it and/or modify it under the
* terms of the GNU General Public License as published by the Free Software
* Foundation; either version 2 of the Licence, or any later version.
* OPUS is distributed in the hope that it will be useful, but WITHOUT ANY
* WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
* details. You should have received a copy of the GNU General Public License
* along with OPUS; if not, write to the Free Software Foundation, Inc., 51
* Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
*
* @category Application
* @package Module_Oai
* @author Arno Kaimbacher <arno.kaimbacher@geologie.ac.at>
* @copyright Copyright (c) 2018-2019, GBA TETHYS development team
* @license http://www.gnu.org/licenses/gpl.html General Public License
*/
-->
<!--
/**
* Transforms the xml representation of an TETHYS model dataset to datacite
* xml as required by the OAI-PMH protocol.
*/
-->
<xsl:stylesheet version="3.0"
xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/"
xmlns:dc="http://purl.org/dc/elements/1.1/"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<xsl:output method="xml" encoding="utf-8" indent="yes" />
<xsl:param name="unixTimestamp" />
<xsl:param name="prefix" />
<xsl:param name="repIdentifier" />
<xsl:template match="Rdr_Dataset">
<resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.3/metadata.xsd">
<!-- <isReferenceQuality>true</isReferenceQuality>
<schemaVersion>4.3</schemaVersion>
<datacentreSymbol>RDR.GBA</datacentreSymbol> -->
<xsl:choose>
<xsl:when test="Identifier">
<xsl:apply-templates select="Identifier" mode="oai_datacite" />
</xsl:when>
<xsl:otherwise>
<identifier identifierType="DOI">
<xsl:value-of select="$prefix" />
<xsl:text>/</xsl:text>
<xsl:value-of select="$repIdentifier" />
<xsl:text>.</xsl:text>
<xsl:value-of select="@PublishId" />
</identifier>
</xsl:otherwise>
</xsl:choose>
<!--<datacite:creator>-->
<creators>
<xsl:apply-templates select="PersonAuthor" mode="oai_datacite">
<xsl:sort select="@SortOrder"/>
</xsl:apply-templates>
</creators>
<titles>
<xsl:apply-templates select="TitleMain" mode="oai_datacite" />
<xsl:apply-templates select="TitleAdditional" mode="oai_datacite" />
</titles>
<publisher>
<!-- <xsl:value-of select="@PublisherName" /> -->
<xsl:value-of select="@CreatingCorporation" />
</publisher>
<publicationYear>
<xsl:value-of select="ServerDatePublished/@Year" />
</publicationYear>
<subjects>
<xsl:apply-templates select="Subject" mode="oai_datacite" />
</subjects>
<language>
<xsl:value-of select="@Language" />
</language>
<xsl:if test="PersonContributor">
<contributors>
<xsl:apply-templates select="PersonContributor" mode="oai_datacite">
<xsl:sort select="@SortOrder"/>
</xsl:apply-templates>
</contributors>
</xsl:if>
<dates>
<xsl:call-template name="RdrDate2" />
</dates>
<version>
<xsl:choose>
<xsl:when test="@Version">
<xsl:value-of select="@Version" />
</xsl:when>
<xsl:otherwise>
<xsl:text>1</xsl:text>
</xsl:otherwise>
</xsl:choose>
</version>
<resourceType resourceTypeGeneral="Dataset">
<xsl:text>Dataset</xsl:text>
<!-- <xsl:value-of select="@Type" /> -->
</resourceType>
<alternateIdentifiers>
<xsl:call-template name="AlternateIdentifier" />
</alternateIdentifiers>
<xsl:if test="Reference">
<relatedIdentifiers>
<xsl:apply-templates select="Reference" mode="oai_datacite" />
</relatedIdentifiers>
</xsl:if>
<rightsList>
<xsl:apply-templates select="Licence" mode="oai_datacite" />
</rightsList>
<sizes>
<size>
<xsl:value-of select="count(File)" />
<xsl:text> datasets</xsl:text>
</size>
</sizes>
<formats>
<xsl:apply-templates select="File/@MimeType" mode="oai_datacite" />
</formats>
<descriptions>
<xsl:apply-templates select="TitleAbstract" mode="oai_datacite" />
<xsl:apply-templates select="TitleAbstractAdditional" mode="oai_datacite" />
</descriptions>
<geoLocations>
<xsl:apply-templates select="Coverage" mode="oai_datacite" />
<!-- <geoLocation>
<geoLocationBox>
<westBoundLongitude>6.58987</westBoundLongitude>
<eastBoundLongitude>6.83639</eastBoundLongitude>
<southBoundLatitude>50.16</southBoundLatitude>
<northBoundLatitude>50.18691</northBoundLatitude>
</geoLocationBox>
</geoLocation> -->
</geoLocations>
</resource>
</xsl:template>
<xsl:template name="RdrDate2"
xmlns="http://datacite.org/schema/kernel-4">
<xsl:if test="EmbargoDate and ($unixTimestamp &lt; EmbargoDate/@UnixTimestamp)">
<date>
<xsl:attribute name="dateType">Available</xsl:attribute>
<xsl:variable name="embargoDate" select="concat(
EmbargoDate/@Year, '-',
format-number(number(EmbargoDate/@Month),'00'), '-',
format-number(number(EmbargoDate/@Day),'00')
)" />
<xsl:value-of select="$embargoDate" />
</date>
</xsl:if>
<xsl:if test="CreatedAt">
<date>
<xsl:attribute name="dateType">Created</xsl:attribute>
<xsl:variable name="createdAt" select="concat(
CreatedAt/@Year, '-',
format-number(number(CreatedAt/@Month),'00'), '-',
format-number(number(CreatedAt/@Day),'00')
)" />
<xsl:value-of select="$createdAt" />
</date>
</xsl:if>
</xsl:template>
<xsl:template match="Coverage" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<geoLocation>
<geoLocationBox>
<westBoundLongitude>
<xsl:value-of select="@XMin" />
</westBoundLongitude>
<eastBoundLongitude>
<xsl:value-of select="@XMax" />
</eastBoundLongitude>
<southBoundLatitude>
<xsl:value-of select="@YMin" />
</southBoundLatitude>
<northBoundLatitude>
<xsl:value-of select="@YMax" />
</northBoundLatitude>
</geoLocationBox>
</geoLocation>
</xsl:template>
<xsl:template match="TitleAbstract" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<description>
<xsl:attribute name="xml:lang">
<xsl:value-of select="@Language" />
</xsl:attribute>
<xsl:if test="@Type != ''">
<xsl:attribute name="descriptionType">
<!-- <xsl:value-of select="@Type" /> -->
<xsl:text>Abstract</xsl:text>
</xsl:attribute>
</xsl:if>
<xsl:value-of select="@Value" />
</description>
</xsl:template>
<xsl:template match="TitleAbstractAdditional" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<description>
<xsl:attribute name="xml:lang">
<xsl:value-of select="@Language" />
</xsl:attribute>
<xsl:if test="@Type != ''">
<xsl:attribute name="descriptionType">
<xsl:call-template name="CamelCaseWord">
<xsl:with-param name="text" select="@Type" />
</xsl:call-template>
</xsl:attribute>
</xsl:if>
<xsl:value-of select="@Value" />
</description>
</xsl:template>
<xsl:template name="CamelCaseWord">
<xsl:param name="text" />
<xsl:param name="firstLower" select="true()" />
<xsl:variable name="Upper">ABCDEFGHIJKLMNOPQRSTUVQXYZ</xsl:variable>
<xsl:variable name="Lower">abcdefghijklmnopqrstuvwxyz</xsl:variable>
<xsl:for-each select="tokenize($text,'_')">
<xsl:choose>
<xsl:when test="position()=1 and $firstLower = true()">
<xsl:value-of select="substring(.,1,1)" />
</xsl:when>
<xsl:otherwise>
<xsl:value-of select="translate(substring(.,1,1),$Lower,$Upper)" />
</xsl:otherwise>
</xsl:choose>
<xsl:value-of select="substring(.,2,string-length(.))" />
</xsl:for-each>
</xsl:template>
<xsl:template match="Identifier" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<identifier>
<xsl:attribute name="identifierType">
<xsl:text>DOI</xsl:text>
</xsl:attribute>
<xsl:value-of select="@Value" />
</identifier>
</xsl:template>
<xsl:template match="TitleMain" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<title>
<xsl:if test="@Language != ''">
<xsl:attribute name="xml:lang">
<xsl:value-of select="@Language" />
</xsl:attribute>
</xsl:if>
<xsl:if test="@Type != '' and @Type != 'Main'">
<xsl:attribute name="titleType">
<xsl:value-of select="@Type" />
</xsl:attribute>
</xsl:if>
<xsl:value-of select="@Value" />
</title>
</xsl:template>
<xsl:template match="TitleAdditional" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<title>
<xsl:if test="@Language != ''">
<xsl:attribute name="xml:lang">
<xsl:value-of select="@Language" />
</xsl:attribute>
</xsl:if>
<xsl:choose>
<xsl:when test="@Type != '' and @Type != 'Sub' and @Type != 'Main'">
<xsl:attribute name="titleType">
<xsl:value-of select="@Type" />
<xsl:text>Title</xsl:text>
</xsl:attribute>
</xsl:when>
<xsl:when test="@Type = 'Sub'">
<xsl:attribute name="titleType">
<xsl:value-of select="@Type" />
<xsl:text>title</xsl:text>
</xsl:attribute>
</xsl:when>
</xsl:choose>
<xsl:value-of select="@Value" />
</title>
</xsl:template>
<xsl:template match="Subject" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<subject>
<xsl:if test="@Language != ''">
<xsl:attribute name="xml:lang">
<xsl:value-of select="@Language" />
</xsl:attribute>
</xsl:if>
<xsl:value-of select="@Value" />
</subject>
</xsl:template>
<xsl:template name="AlternateIdentifier" match="AlternateIdentifier" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<alternateIdentifier>
<xsl:attribute name="alternateIdentifierType">
<xsl:text>url</xsl:text>
</xsl:attribute>
<!-- <xsl:variable name="identifier" select="concat($repURL, '/dataset/', @Id)" /> -->
<xsl:value-of select="@landingpage" />
</alternateIdentifier>
</xsl:template>
<xsl:template match="Reference" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<relatedIdentifier>
<xsl:attribute name="relatedIdentifierType">
<xsl:value-of select="@Type" />
</xsl:attribute>
<xsl:attribute name="relationType">
<xsl:value-of select="@Relation" />
</xsl:attribute>
<xsl:value-of select="@Value" />
</relatedIdentifier>
</xsl:template>
<xsl:template match="PersonContributor" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<contributor>
<xsl:if test="@ContributorType != ''">
<xsl:attribute name="contributorType">
<xsl:value-of select="@ContributorType" />
</xsl:attribute>
</xsl:if>
<contributorName>
<!-- <xsl:if test="@NameType != ''">
<xsl:attribute name="nameType">
<xsl:value-of select="@NameType" />
</xsl:attribute>
</xsl:if> -->
<xsl:value-of select="concat(@FirstName, ' ',@LastName)" />
</contributorName>
</contributor>
</xsl:template>
<xsl:template match="PersonAuthor" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<creator>
<creatorName>
<xsl:if test="@NameType != ''">
<xsl:attribute name="nameType">
<xsl:value-of select="@NameType" />
</xsl:attribute>
</xsl:if>
<xsl:value-of select="@LastName" />
<xsl:if test="@FirstName != ''">
<xsl:text>, </xsl:text>
</xsl:if>
<xsl:value-of select="@FirstName" />
<xsl:if test="@AcademicTitle != ''">
<xsl:text> (</xsl:text>
<xsl:value-of select="@AcademicTitle" />
<xsl:text>)</xsl:text>
</xsl:if>
</creatorName>
<xsl:if test="@NameType = 'Personal'">
<givenName>
<xsl:value-of select="@FirstName" />
</givenName>
<familyName>
<xsl:value-of select="@LastName" />
</familyName>
<xsl:if test="@IdentifierOrcid != ''">
<nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">
<xsl:value-of select="@IdentifierOrcid" />
</nameIdentifier>
</xsl:if>
<affiliation>GBA</affiliation>
</xsl:if>
<xsl:if test="@NameType = 'Organizational'">
<xsl:if test="@IdentifierOrcid != ''">
<nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">
<xsl:value-of select="@IdentifierOrcid" />
</nameIdentifier>
</xsl:if>
</xsl:if>
<!--
<nameType><xsl:value-of select="@NameType" /></nameType>
</xsl:if> -->
</creator>
</xsl:template>
<xsl:template match="File/@MimeType" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<format>
<xsl:value-of select="." />
</format>
</xsl:template>
<xsl:template match="Licence" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<rights>
<xsl:attribute name="xml:lang">
<xsl:value-of select="@Language" />
</xsl:attribute>
<xsl:if test="@LinkLicence != ''">
<xsl:attribute name="rightsURI">
<xsl:value-of select="@LinkLicence" />
</xsl:attribute>
</xsl:if>
<xsl:attribute name="schemeURI">
<xsl:text>https://spdx.org/licenses/</xsl:text>
</xsl:attribute>
<xsl:attribute name="rightsIdentifierScheme">
<xsl:text>SPDX</xsl:text>
</xsl:attribute>
<xsl:attribute name="rightsIdentifier">
<xsl:value-of select="@Name" />
</xsl:attribute>
<xsl:value-of select="@NameLong" />
</rights>
<xsl:if test="@Name = 'CC-BY-4.0' or @Name = 'CC-BY-SA-4.0'">
<rights>
<xsl:attribute name="rightsURI">
<xsl:text>info:eu-repo/semantics/openAccess</xsl:text>
</xsl:attribute>
<xsl:text>Open Access</xsl:text>
</rights>
</xsl:if>
</xsl:template>
</xsl:stylesheet>

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@ -158,7 +158,7 @@
</xsl:if>
<xsl:if test="CreatedAt">
<date>
<xsl:attribute name="dateType">created</xsl:attribute>
<xsl:attribute name="dateType">Created</xsl:attribute>
<xsl:variable name="createdAt" select="concat(
CreatedAt/@Year, '-',
format-number(number(CreatedAt/@Month),'00'), '-',
@ -221,7 +221,6 @@
</description>
</xsl:template>
<xsl:template name="CamelCaseWord">
<xsl:param name="text" />
<xsl:param name="firstLower" select="true()" />
@ -240,7 +239,6 @@
</xsl:for-each>
</xsl:template>
<xsl:template match="Identifier" mode="oai_datacite"
xmlns="http://datacite.org/schema/kernel-4">
<identifier>
@ -376,13 +374,20 @@
<familyName>
<xsl:value-of select="@LastName" />
</familyName>
<xsl:if test="@IdentifierOrcid != ''">
<nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">
<xsl:value-of select="@IdentifierOrcid" />
</nameIdentifier>
</xsl:if>
<affiliation>GBA</affiliation>
</xsl:if>
<xsl:if test="@IdentifierOrcid != ''">
<nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">
<xsl:value-of select="@IdentifierOrcid" />
</nameIdentifier>
<xsl:if test="@NameType = 'Organizational'">
<xsl:if test="@IdentifierOrcid != ''">
<nameIdentifier schemeURI="http://orcid.org/" nameIdentifierScheme="ORCID">
<xsl:value-of select="@IdentifierOrcid" />
</nameIdentifier>
</xsl:if>
</xsl:if>
<!--
<nameType><xsl:value-of select="@NameType" /></nameType>